STRINGSTRING
Bra007076 protein (Brassica rapa) - STRING interaction network
"Bra007076" - AT3G54510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007076AT3G54510 (E=0.0) | early-responsive to dehydration protein-related / ERD protein-related (704 aa)    
Predicted Functional Partners:
Bra007144
AT1G48350 (E=2e-024) | ribosomal protein L18 family protein (181 aa)
     
      0.491
Bra018640
AT2G27600 (E=1e-227) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (430 aa)
       
      0.478
Bra012009
AT2G27600 (E=2e-222) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
       
      0.478
Bra000503
AT2G27600 (E=1e-236) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
       
      0.478
Bra039023
AT2G19830 (E=2e-074) SNF7.2, VPS32 | SNF7.2 (215 aa)
       
      0.438
Bra036700
AT2G19830 (E=7e-082) SNF7.2, VPS32 | SNF7.2 (212 aa)
       
      0.438
Bra024160
AT4G29160 (E=7e-067) SNF7.1 | SNF7.1 (213 aa)
       
      0.438
Bra015055
AT4G29160 (E=9e-040) SNF7.1 | SNF7.1 (156 aa)
       
      0.438
Bra011085
AT4G29160 (E=3e-066) SNF7.1 | SNF7.1 (212 aa)
       
      0.438
Bra018060
AT3G48430 (E=0.0) REF6 | REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (1385 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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