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Bra007079 protein (Brassica rapa) - STRING interaction network
"Bra007079" - AT3G54540 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007079AT3G54540 (E=0.0) ATGCN4 | ATGCN4; transporter (718 aa)    
Predicted Functional Partners:
Bra002185
AT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)
     
      0.895
Bra002185.1-P
AT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)
     
      0.895
Bra031113
AT1G76810 (E=2e-055) | eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (454 aa)
     
 
  0.686
Bra032525
AT1G04170 (E=3e-262) EIF2 GAMMA | EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (465 aa)
     
    0.652
Bra015292
AT1G04170 (E=2e-259) EIF2 GAMMA | EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (465 aa)
     
    0.652
Bra008506
AT1G64790 (E=0.0) | binding (2613 aa)
     
 
  0.646
Bra041145
ATCG01240 (E=2e-067) RPS7.2 | 30S chloroplast ribosomal protein S7 (156 aa)
   
      0.643
Bra034799
AT3G11940 (E=9e-109) ATRPS5A, AML1 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (207 aa)
   
      0.643
Bra034799.1-P
AT3G11940 (E=9e-109) ATRPS5A, AML1 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (207 aa)
   
      0.643
Bra023113
AT2G37270 (E=5e-110) ATRPS5B | ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome (387 aa)
   
      0.643
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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