STRINGSTRING
Bra007082 protein (Brassica rapa) - STRING interaction network
"Bra007082" - AT3G54610 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007082AT3G54610 (E=3e-073) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (258 aa)    
Predicted Functional Partners:
Bra030901
AT1G54140 (E=2e-070) TAFII21, TAF9 | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT); DNA binding / transcription initiation factor (179 aa)
     
  0.978
Bra040578
AT4G16420 (E=5e-267) ADA2B, PRZ1 | ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor (486 aa)
     
  0.977
Bra029673
AT3G07740 (E=9e-261) ADA2A, ATADA2A, HAC10, HXA02, HXA2 | ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor/ zinc ion binding (549 aa)
     
  0.977
Bra012721
AT4G16420 (E=6e-199) ADA2B, PRZ1 | ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor (469 aa)
     
  0.977
Bra028566
AT5G10790 (E=7e-222) UBP22 | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (504 aa)
       
  0.975
Bra011293
AT4G31720 (E=7e-066) TAFII15, STG1 | TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor (134 aa)
       
  0.975
Bra010224
AT4G31720 (E=2e-064) TAFII15, STG1 | TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor (134 aa)
       
  0.975
Bra037246
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3775 aa)
     
  0.975
Bra024486
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3858 aa)
     
  0.975
Bra011659
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3756 aa)
     
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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