STRINGSTRING
Bra007084 protein (Brassica rapa) - STRING interaction network
"Bra007084" - AT3G54630 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007084AT3G54630 (E=6e-198) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Kinetochore protein Ndc80 (InterPro-IPR005550); Has 19800 Blast hits to 12108 proteins in 845 species- Archae - 345; Bacteria - 1709; Metazoa - 11031; Fungi - 1499; Plants - 797; Viruses - 39; Other Eukaryotes - 4380 (source- NCBI BLink). (574 aa)    
Predicted Functional Partners:
Bra000094
AT1G61000 (E=1e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- mitosis; LOCATED IN- plasma membrane; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Kinetochore protein Nuf2 (InterPro-IPR005549); BEST Arabidopsis thaliana protein match is- myosin heavy chain-related (TAIR-AT1G64330.1); Has 41010 Blast hits to 23184 proteins in 1264 species- Archae - 616; Bacteria - 3998; Metazoa - 20566; Fungi - 2893; Plants - 1316; Viruses - 149; Other Eukaryotes - 11472 (source- NCBI BLink). (429 aa)
     
  0.997
Bra031462
AT1G60995 (E=2e-306) | unknown protein (622 aa)
     
  0.997
Bra031135
AT2G20635 (E=6e-112) | ATP binding / protein kinase/ protein serine/threonine kinase (475 aa)
     
  0.996
Bra015240
AT2G33560 (E=2e-071) | spindle checkpoint protein-related (232 aa)
     
  0.996
Bra015658
AT1G77720 (E=1e-260) | protein kinase family protein (671 aa)
     
 
  0.993
Bra003671
AT1G77720 (E=3e-287) | protein kinase family protein (740 aa)
     
 
  0.993
Bra018145
AT3G47460 (E=0.0) ATSMC2 | ATSMC2; transporter (1175 aa)
     
  0.989
Bra010079
AT5G62410 (E=0.0) SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (1175 aa)
     
  0.989
Bra035686
AT2G28620 (E=0.0) | kinesin motor protein-related (1047 aa)
     
  0.988
Bra033832
AT3G45850 (E=0.0) | kinesin motor protein-related (1052 aa)
     
  0.988
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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