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Bra007085 protein (Brassica rapa) - STRING interaction network
"Bra007085" - AT3G54640 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007085AT3G54640 (E=3e-143) TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase (311 aa)    
Predicted Functional Partners:
Bra002954
AT5G54810 (E=1e-250) TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase (465 aa)
 
  0.999
Bra019075
AT4G27070 (E=4e-255) TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase (472 aa)
 
  0.999
Bra016829
AT5G28237 (E=2e-222) | tryptophan synthase, beta subunit, putative (464 aa)
 
  0.997
Bra026381
AT4G27070 (E=2e-037) TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase (101 aa)
 
  0.996
Bra037230
AT5G28237 (E=3e-186) | tryptophan synthase, beta subunit, putative (441 aa)
 
  0.996
Bra016830
AT5G28237 (E=8e-148) | tryptophan synthase, beta subunit, putative (452 aa)
 
  0.996
Bra019072
AT4G27070 (E=2e-027) TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase (294 aa)
 
  0.996
Bra037502
AT5G48220 (E=1e-183) | indole-3-glycerol phosphate synthase, putative (382 aa)
 
 
  0.994
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
 
  0.976
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
 
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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