STRINGSTRING
Bra007086 protein (Brassica rapa) - STRING interaction network
"Bra007086" - AT3G54650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007086AT3G54650 (E=1e-221) FBL17 | FBL17; ubiquitin-protein ligase (580 aa)    
Predicted Functional Partners:
Bra018812
AT1G49620 (E=2e-029) KRP7, ICN6, ICK5 | ICK5; cyclin binding / cyclin-dependent protein kinase inhibitor (165 aa)
       
 
  0.809
Bra001736
AT3G19150 (E=9e-016) KRP6, ICK4 | KRP6 (KIP-RELATED PROTEIN 6); cyclin binding / cyclin-dependent protein kinase inhibitor (177 aa)
       
 
  0.789
Bra022897
AT2G32710 (E=1e-054) KRP4, ACK2, ICK7 | KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor (250 aa)
       
 
  0.631
Bra008231
AT1G75950 (E=2e-076) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
       
 
  0.624
Bra003735
AT1G75950 (E=9e-077) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
       
 
  0.624
Bra018417
AT1G10940 (E=6e-179) ASK1, SNRK2-4, SNRK2.4, SRK2A | SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinase (354 aa)
       
      0.613
Bra039199
AT2G23430 (E=7e-044) ICK1, KRP1 | ICK1; cyclin-dependent protein kinase inhibitor (170 aa)
       
 
  0.575
Bra027727
AT1G64570 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Homeodomain-like (InterPro-IPR009057); Has 1675 Blast hits to 1424 proteins in 225 species- Archae - 2; Bacteria - 192; Metazoa - 559; Fungi - 257; Plants - 67; Viruses - 46; Other Eukaryotes - 552 (source- NCBI BLink). (1241 aa)
           
  0.478
Bra003413
AT3G60460 (E=9e-119) DUO1 | DUO1 (DUO POLLEN 1); DNA binding / transcription factor (291 aa)
           
  0.478
Bra007536
AT3G60460 (E=2e-082) DUO1 | DUO1 (DUO POLLEN 1); DNA binding / transcription factor (269 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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