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Bra007088 protein (Brassica rapa) - STRING interaction network
"Bra007088" - AT3G54670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007088AT3G54670 (E=0.0) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1237 aa)    
Predicted Functional Partners:
Bra034328
AT2G27170 (E=0.0) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1243 aa)
   
0.996
Bra000522
AT2G27170 (E=1e-200) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1097 aa)
     
0.995
Bra004420
AT2G47980 (E=0.0) SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding (1523 aa)
     
  0.995
Bra007459
AT3G59550 (E=4e-224) SYN3, ATRAD21.2, ATSYN3 | SYN3 (688 aa)
     
  0.987
Bra006346
AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (1022 aa)
     
  0.987
Bra023558
AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (992 aa)
     
  0.986
Bra008628
AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (1016 aa)
     
  0.986
Bra025542
AT5G40840 (E=5e-285) SYN2 | SYN2 (844 aa)
     
  0.984
Bra021567
AT3G59550 (E=1e-032) SYN3, ATRAD21.2, ATSYN3 | SYN3 (102 aa)
     
  0.984
Bra013315
AT5G05490 (E=9e-012) SYN1, ATREC8, REC8 | SYN1 (SYNAPTIC 1) (408 aa)
     
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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