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Bra007096 protein (Brassica rapa) - STRING interaction network
"Bra007096" - AT3G54770 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007096AT3G54770 (E=5e-098) | RNA recognition motif (RRM)-containing protein (259 aa)    
Predicted Functional Partners:
Bra020279
AT3G46020 (E=2e-038) | RNA-binding protein, putative (110 aa)
   
     
  0.445
Bra033287
AT1G01080 (E=3e-093) | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (192 aa)
   
     
  0.436
Bra024276
AT5G64200 (E=3e-057) ATSC35, SC35 | ATSC35; RNA binding / nucleic acid binding / nucleotide binding (280 aa)
   
     
  0.434
Bra029020
AT5G54580 (E=2e-067) | RNA recognition motif (RRM)-containing protein (153 aa)
   
     
  0.425
Bra020076
AT5G19960 (E=9e-124) | RNA recognition motif (RRM)-containing protein (323 aa)
   
          0.413
Bra029692
AT3G08000 (E=2e-055) | RNA-binding protein, putative (143 aa)
   
     
  0.409
Bra027821
AT1G60000 (E=5e-113) | 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative (254 aa)
   
     
  0.409
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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