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Bra007101 protein (Brassica rapa) - STRING interaction network
"Bra007101" - AT3G54826 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007101AT3G54826 (E=1e-053) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Zinc finger, Zim17-type (InterPro-IPR007853); Has 284 Blast hits to 284 proteins in 134 species- Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 79; Plants - 58; Viruses - 0; Other Eukaryotes - 47 (source- NCBI BLink). (196 aa)    
Predicted Functional Partners:
Bra020203
AT5G22630 (E=2e-211) ADT5 | ADT5 (arogenate dehydratase 5); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (432 aa)
       
      0.898
Bra002423
AT5G22630 (E=8e-221) ADT5 | ADT5 (arogenate dehydratase 5); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (432 aa)
       
      0.898
Bra028628
AT5G09590 (E=0.0) MTHSC70-2, HSC70-5 | MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (680 aa)
       
 
  0.784
Bra028626
AT5G09590 (E=5e-025) MTHSC70-2, HSC70-5 | MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (156 aa)
       
 
  0.784
Bra019231
AT4G24280 (E=0.0) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (710 aa)
       
 
  0.784
Bra013788
AT4G24280 (E=2e-114) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (534 aa)
       
 
  0.784
Bra013786
AT4G24280 (E=0.0) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (711 aa)
       
 
  0.784
Bra011794
AT4G37910 (E=0.0) mtHsc70-1 | mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding (682 aa)
       
 
  0.784
Bra010620
AT4G37910 (E=0.0) mtHsc70-1 | mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding (676 aa)
       
 
  0.784
Bra010498
AT4G24280 (E=0.0) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (717 aa)
       
 
  0.784
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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