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Bra007104 protein (Brassica rapa) - STRING interaction network
"Bra007104" - AT3G54840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007104AT3G54840 (E=1e-100) ARA6, ATRABF1, ARA-6, ATRAB5C | ARA6; GTP binding / GTPase (278 aa)    
Predicted Functional Partners:
Bra022450
AT3G19770 (E=1e-190) ATVPS9A, VPS9A | VPS9A; Rho guanyl-nucleotide exchange factor (465 aa)
       
 
  0.952
Bra009378
AT5G09320 (E=2e-179) VPS9B | VPS9B (512 aa)
       
 
  0.952
Bra036456
AT1G49300 (E=5e-047) ATRAB7, ATRABG3E, RABG3E | RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding (132 aa)
     
  0.837
Bra023773
AT1G22740 (E=3e-017) RAB7, ATRABG3B, RAB75, RABG3B | RABG3B; GTP binding (75 aa)
     
  0.837
Bra020367
AT5G58460 (E=0.0) ATCHX25, CHX25 | ATCHX25; monovalent cation-proton antiporter/ sodium-hydrogen antiporter (921 aa)
     
  0.815
Bra009166
AT5G06140 (E=2e-206) SNX1, ATSNX1 | SNX1 (SORTING NEXIN 1); phosphoinositide binding / protein binding (390 aa)
     
  0.807
Bra002651
AT5G58440 (E=1e-230) SNX2a | SNX2a (SORTING NEXIN 2a); phosphoinositide binding (556 aa)
     
  0.807
Bra007144
AT1G48350 (E=2e-024) | ribosomal protein L18 family protein (181 aa)
       
 
  0.799
Bra028630
AT5G09550 (E=3e-248) | RAB GDP-dissociation inhibitor (613 aa)
       
 
  0.788
Bra014523
AT3G59920 (E=1e-250) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (444 aa)
       
 
  0.788
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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