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Bra007106 protein (Brassica rapa) - STRING interaction network
"Bra007106" - AT3G54860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007106AT3G54860 (E=0.0) ATVPS33, VPS33 | vacuolar protein sorting protein, putative (593 aa)    
Predicted Functional Partners:
Bra000035
AT2G38020 (E=3e-282) VCL1, MAN, EMB258 | VCL1 (VACUOLELESS 1) (820 aa)
     
 
  0.992
Bra018644
AT1G08190 (E=0.0) | vacuolar assembly protein, putative (VPS41) (984 aa)
     
 
  0.978
Bra019769
AT1G12470 (E=2e-254) | Pep3/Vps18/deep orange family protein (811 aa)
     
 
  0.974
Bra016770
AT1G12470 (E=0.0) | Pep3/Vps18/deep orange family protein (964 aa)
     
 
  0.974
Bra015160
AT2G05170 (E=0.0) ATVPS11 | ATVPS11; binding / protein binding / transporter/ zinc ion binding (934 aa)
     
 
  0.960
Bra032848
AT5G05760 (E=1e-019) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (108 aa)
     
  0.957
Bra028370
AT3G24350 (E=5e-101) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (297 aa)
     
  0.957
Bra015036
AT3G24350 (E=6e-129) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (344 aa)
     
  0.957
Bra005866
AT5G05760 (E=9e-132) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (340 aa)
     
  0.957
Bra001945
AT3G24350 (E=4e-108) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (367 aa)
     
  0.957
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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