STRINGSTRING
Bra007107 protein (Brassica rapa) - STRING interaction network
"Bra007107" - AT3G54870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007107AT3G54870 (E=0.0) MRH2, ARK1, CAE1 | MRH2 (MORPHOGENESIS OF ROOT HAIR 2); actin binding / microtubule binding / microtubule motor (1132 aa)    
Predicted Functional Partners:
Bra032832
AT1G27500 (E=7e-295) | kinesin light chain-related (659 aa)
       
  0.844
Bra029123
AT5G53080 (E=7e-010) | kinesin light chain-related (205 aa)
       
  0.844
Bra028130
AT5G37590 (E=8e-106) | binding (472 aa)
       
  0.844
Bra025315
AT3G27960 (E=0.0) | kinesin light chain-related (664 aa)
       
  0.844
Bra022627
AT5G53080 (E=2e-199) | kinesin light chain-related (543 aa)
       
  0.844
Bra021713
AT2G31240 (E=2e-253) | tetratricopeptide repeat (TPR)-containing protein (513 aa)
       
  0.844
Bra000724
AT4G10840 (E=2e-308) | kinesin light chain-related (608 aa)
       
  0.844
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
     
  0.823
Bra039648
AT1G04820 (E=5e-243) TUA4 | TUA4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (450 aa)
     
  0.798
Bra020572
AT4G14960 (E=4e-115) TUA6 | TUA6; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (468 aa)
     
  0.798
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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