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Bra007109 protein (Brassica rapa) - STRING interaction network
"Bra007109" - AT3G54890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007109AT3G54890 (E=1e-133) LHCA1 | LHCA1; chlorophyll binding (241 aa)    
Predicted Functional Partners:
Bra036240
AT4G02770 (E=3e-098) PSAD-1 | PSAD-1 (photosystem I subunit D-1) (279 aa)
     
 
  0.969
Bra023176
AT1G31330 (E=2e-100) PSAF | PSAF (photosystem I subunit F) (220 aa)
     
 
  0.962
Bra038418
AT1G31330 (E=6e-090) PSAF | PSAF (photosystem I subunit F) (213 aa)
     
 
  0.962
Bra014908
AT1G31330 (E=3e-103) PSAF | PSAF (photosystem I subunit F) (217 aa)
     
 
  0.962
Bra027083
AT1G61520 (E=5e-132) LHCA3 | LHCA3; chlorophyll binding (271 aa)
     
 
0.954
Bra031427
AT1G61520 (E=1e-138) LHCA3 | LHCA3; chlorophyll binding (273 aa)
     
 
0.954
Bra041122
ATCG00350 (E=6e-307) PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. (546 aa)
       
 
  0.951
Bra027188
AT3G16140 (E=2e-054) PSAH-1 | PSAH-1 (photosystem I subunit H-1) (145 aa)
     
 
  0.949
Bra021163
AT3G16140 (E=1e-052) PSAH-1 | PSAH-1 (photosystem I subunit H-1) (145 aa)
     
 
  0.949
Bra018955
AT1G52230 (E=2e-065) PSAH2, PSAH-2, PSI-H | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) (145 aa)
     
 
  0.949
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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