STRINGSTRING
Bra007116 protein (Brassica rapa) - STRING interaction network
"Bra007116" - AT5G04310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007116AT5G04310 (E=6e-152) | pectate lyase family protein (490 aa)    
Predicted Functional Partners:
Bra040563
AT1G53830 (E=1e-282) ATPME2 | ATPME2; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (585 aa)
       
  0.922
Bra040293
AT3G06830 (E=3e-252) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (560 aa)
       
  0.922
Bra039421
AT3G05610 (E=2e-303) | pectinesterase family protein (616 aa)
       
  0.922
Bra039419
AT3G05620 (E=3e-267) | pectinesterase family protein (539 aa)
       
  0.922
Bra036610
AT5G27870 (E=8e-275) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (701 aa)
       
  0.922
Bra036280
AT4G02300 (E=2e-193) | pectinesterase family protein (522 aa)
       
  0.922
Bra036279
AT4G02320 (E=2e-214) | pectinesterase family protein (516 aa)
       
  0.922
Bra036278
AT4G02330 (E=6e-295) ATPMEPCRB | ATPMEPCRB; pectinesterase (572 aa)
       
  0.922
Bra035579
AT5G55590 (E=2e-150) QRT1 | QRT1 (QUARTET 1); pectinesterase (378 aa)
       
  0.922
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.922
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]