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Bra007118 protein (Brassica rapa) - STRING interaction network
"Bra007118" - AT3G54940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007118AT3G54940 (E=6e-171) | cysteine-type endopeptidase/ cysteine-type peptidase (364 aa)    
Predicted Functional Partners:
Bra041031
AT1G29090 (E=4e-030) | peptidase C1A papain family protein (111 aa)
     
  0.738
Bra039903
AT1G02305 (E=7e-039) | cathepsin B-like cysteine protease, putative (230 aa)
     
  0.738
Bra030829
AT1G29080 (E=1e-008) | peptidase C1A papain family protein (305 aa)
     
  0.738
Bra016387
AT1G20850 (E=7e-030) XCP2 | XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase (113 aa)
     
  0.738
Bra015490
AT1G20850 (E=3e-009) XCP2 | XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase (103 aa)
     
  0.738
Bra015489
AT1G20850 (E=1e-022) XCP2 | XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase (116 aa)
     
  0.738
Bra015259
AT1G03720 (E=9e-035) | cathepsin-related (162 aa)
     
  0.738
Bra008578
AT5G17140 (E=2e-017) | cysteine proteinase-related (132 aa)
     
  0.738
Bra005478
AT1G47128 (E=4e-032) RD21, RD21A | RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase (111 aa)
     
  0.738
Bra036321
AT4G01610 (E=6e-175) | cathepsin B-like cysteine protease, putative (358 aa)
   
0.683
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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