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Bra007129 protein (Brassica rapa) - STRING interaction network
"Bra007129" - AT3G55030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007129AT3G55030 (E=1e-100) PGPS2 | PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (227 aa)    
Predicted Functional Partners:
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
       
  0.914
Bra021545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1774 aa)
       
  0.914
Bra016167
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1541 aa)
       
  0.914
Bra011429
AT4G33240 (E=0.0) | 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding (1719 aa)
       
  0.914
Bra007954
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1539 aa)
       
  0.914
Bra001545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1767 aa)
       
  0.914
Bra037267
AT2G17510 (E=0.0) EMB2763 | EMB2763 (EMBRYO DEFECTIVE 2763); RNA binding / ribonuclease (934 aa)
       
 
  0.893
Bra009603
AT5G02250 (E=0.0) EMB2730, RNR1, ATMTRNASEII | EMB2730 (EMBRYO DEFECTIVE 2730); 3’-5’-exoribonuclease/ RNA binding / ribonuclease (800 aa)
       
 
  0.893
Bra008322
AT1G77680 (E=0.0) | ribonuclease II family protein ; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1011 aa)
       
 
  0.893
Bra000374
AT2G45150 (E=4e-161) | phosphatidate cytidylyltransferase family protein (632 aa)
   
 
  0.790
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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