STRINGSTRING
Bra007135 protein (Brassica rapa) - STRING interaction network
"Bra007135" - AT3G55080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007135AT3G55080 (E=2e-045) | SET domain-containing protein (327 aa)    
Predicted Functional Partners:
Bra040022
AT3G07670 (E=3e-258) | SET domain-containing protein (507 aa)
       
 
  0.511
Bra032788
AT1G24610 (E=8e-194) | SET domain-containing protein (468 aa)
       
 
  0.511
Bra032787
AT1G24610 (E=9e-155) | SET domain-containing protein (321 aa)
       
 
  0.511
Bra032786
AT1G24610 (E=7e-238) | SET domain-containing protein (474 aa)
       
 
  0.511
Bra026865
AT1G14030 (E=6e-236) | ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (484 aa)
       
 
  0.511
Bra023605
AT5G17240 (E=1e-016) SDG40 | SDG40 (SET DOMAIN GROUP 40) (56 aa)
       
 
  0.511
Bra023454
AT5G14260 (E=3e-264) | SET domain-containing protein (505 aa)
       
 
  0.511
Bra007252
AT3G56570 (E=1e-188) | SET domain-containing protein (499 aa)
       
 
  0.511
Bra006349
AT4G01270 (E=5e-022) | zinc finger (C3HC4-type RING finger) family protein (184 aa)
       
 
  0.511
Bra036713
AT2G19640 (E=2e-144) ASHR2 | ASHR2 (ASH1-RELATED PROTEIN 2) (381 aa)
     
   
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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