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Bra007142 protein (Brassica rapa) - STRING interaction network
"Bra007142" - AT3G55120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007142AT3G55120 (E=2e-107) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (251 aa)    
Predicted Functional Partners:
Bra036828
AT3G51240 (E=5e-197) F3H, TT6, F3’H | F3H (FLAVANONE 3-HYDROXYLASE); naringenin 3-dioxygenase (358 aa)
     
  0.979
Bra008792
AT5G13930 (E=4e-219) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (395 aa)
     
  0.978
Bra006224
AT5G13930 (E=2e-216) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (396 aa)
     
  0.978
Bra027457
AT5G42800 (E=3e-194) DFR, TT3, M318 | DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase (385 aa)
     
  0.975
Bra009312
AT5G07990 (E=4e-244) TT7, CYP75B1, D501 | TT7 (TRANSPARENT TESTA 7); flavonoid 3’-monooxygenase/ oxygen binding (511 aa)
     
 
  0.948
Bra009358
AT5G08640 (E=1e-174) FLS | FLS (FLAVONOL SYNTHASE); flavonol synthase (336 aa)
     
  0.702
Bra012767
AT4G15760 (E=2e-190) MO1 | MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase (398 aa)
           
  0.666
Bra007316
AT3G57280 (E=2e-098) | unknown protein (217 aa)
           
  0.666
Bra019350
AT4G22880 (E=2e-182) LDOX, TDS4, TT18, ANS | LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase (357 aa)
     
  0.656
Bra013652
AT4G22880 (E=3e-184) LDOX, TDS4, TT18, ANS | LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase (358 aa)
     
  0.656
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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