STRINGSTRING
Bra007153 protein (Brassica rapa) - STRING interaction network
"Bra007153" - AT3G55350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007153AT3G55350 (E=8e-186) | unknown protein (405 aa)    
Predicted Functional Partners:
Bra007367
AT3G57940 (E=0.0) | unknown protein (1021 aa)
           
  0.604
Bra018437
AT1G10490 (E=0.0) | unknown protein (1024 aa)
           
  0.570
Bra010764
AT1G30480 (E=8e-119) DRT111 | DRT111; nucleic acid binding / nucleotide binding (366 aa)
           
  0.414
Bra024887
AT2G01440 (E=0.0) | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (974 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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