STRINGSTRING
Bra007154 protein (Brassica rapa) - STRING interaction network
"Bra007154" - AT3G55360 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007154AT3G55360 (E=7e-174) CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) (310 aa)    
Predicted Functional Partners:
Bra006062
AT5G10480 (E=9e-105) PAS2, PEP | PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase (231 aa)
     
  0.967
Bra020290
AT5G59770 (E=2e-097) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein-tyrosine phosphatase-like, PTPLA (InterPro-IPR007482); BEST Arabidopsis thaliana protein match is- PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase (TAIR-AT5G10480.2); Has 525 Blast hits to 525 proteins in 144 species- Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 120; Plants - 70; Viruses - 0; Other Eukaryotes - [...] (224 aa)
     
  0.966
Bra033983
AT1G67730 (E=7e-163) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (319 aa)
     
 
  0.957
Bra004251
AT1G67730 (E=4e-164) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (318 aa)
     
 
  0.957
Bra036090
AT3G50560 (E=2e-110) | short-chain dehydrogenase/reductase (SDR) family protein (274 aa)
     
 
  0.944
Bra032801
AT1G24470 (E=2e-145) KCR2 | short-chain dehydrogenase/reductase (SDR) family protein (303 aa)
     
 
  0.938
Bra037336
AT4G00360 (E=1e-304) CYP86A2, ATT1 | CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (559 aa)
         
  0.935
Bra008519
AT4G00360 (E=4e-301) CYP86A2, ATT1 | CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (555 aa)
         
  0.935
Bra004951
AT2G45970 (E=4e-295) CYP86A8, LCR | CYP86A8; fatty acid (omega-1)-hydroxylase/ oxygen binding (538 aa)
         
  0.935
Bra031996
AT3G03330 (E=8e-081) | short-chain dehydrogenase/reductase (SDR) family protein (358 aa)
     
 
  0.910
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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