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Bra007159 protein (Brassica rapa) - STRING interaction network
"Bra007159" - AT3G55400 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007159AT3G55400 (E=2e-293) OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding (610 aa)    
Predicted Functional Partners:
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
0.996
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
0.996
Bra007498
AT3G59980 (E=6e-107) | tRNA-binding region domain-containing protein (270 aa)
   
  0.986
Bra004583
AT2G40660 (E=1e-148) | tRNA-binding region domain-containing protein (382 aa)
   
  0.986
Bra024759
AT1G25350 (E=2e-197) OVA9 | OVA9 (ovule abortion 9); glutamine-tRNA ligase (727 aa)
   
  0.960
Bra036585
AT5G26710 (E=0.0) | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (721 aa)
   
  0.959
Bra026410
AT5G26710 (E=3e-314) | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (1319 aa)
   
  0.959
Bra024262
AT5G64050 (E=2e-178) ATERS, OVA3, ERS | ERS (GLUTAMATE TRNA SYNTHETASE); glutamate-tRNA ligase (584 aa)
   
  0.959
Bra020529
AT5G26710 (E=0.0) | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (721 aa)
   
  0.959
Bra004173
AT1G66520 (E=1e-177) pde194 | pde194 (pigment defective 194); catalytic/ formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase (359 aa)
   
 
  0.941
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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