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Bra007163 protein (Brassica rapa) - STRING interaction network
"Bra007163" - AT3G55440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007163AT3G55440 (E=3e-048) ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase (192 aa)    
Predicted Functional Partners:
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
  0.999
Bra039342
AT3G12780 (E=1e-227) PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (480 aa)
   
  0.997
Bra035124
AT1G79550 (E=1e-219) PGK | PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase (401 aa)
   
  0.997
Bra034731
AT3G12780 (E=9e-044) PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (106 aa)
   
  0.997
Bra034729
AT3G12780 (E=2e-160) PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (376 aa)
   
  0.997
Bra008421
AT1G79550 (E=2e-220) PGK | PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase (401 aa)
   
  0.997
Bra003605
AT1G79550 (E=1e-213) PGK | PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase (401 aa)
   
  0.997
Bra001470
AT3G12780 (E=5e-220) PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (484 aa)
   
  0.997
Bra024064
AT2G36530 (E=2e-029) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (188 aa)
   
  0.995
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
   
  0.995
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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