STRINGSTRING
Bra007166 protein (Brassica rapa) - STRING interaction network
"Bra007166" - AT3G55470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007166AT3G55470 (E=2e-078) | C2 domain-containing protein (155 aa)    
Predicted Functional Partners:
Bra026848
AT1G14205 (E=2e-051) | ribosomal protein L18 family protein (164 aa)
           
  0.606
Bra001089
AT3G03770 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (796 aa)
           
  0.606
Bra027089
AT1G61370 (E=0.0) | S-locus lectin protein kinase family protein (1602 aa)
           
  0.586
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
           
  0.543
Bra029438
AT4G12120 (E=0.0) SEC1B, ATSEC1B | SEC1B; protein transporter (659 aa)
           
  0.530
Bra022172
AT3G16640 (E=7e-084) TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (168 aa)
           
  0.495
Bra021187
AT3G16640 (E=1e-074) TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (168 aa)
           
  0.495
Bra001637
AT3G16640 (E=4e-075) TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (168 aa)
           
  0.495
Bra026363
AT4G27290 (E=2e-204) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (828 aa)
           
  0.483
Bra019059
AT4G27290 (E=1e-194) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (818 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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