STRINGSTRING
Bra007171 protein (Brassica rapa) - STRING interaction network
"Bra007171" - AT3G55510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007171AT3G55510 (E=3e-211) RBL | RBL (REBELOTE) (628 aa)    
Predicted Functional Partners:
Bra016057
AT1G72440 (E=3e-204) EDA25 | EDA25 (embryo sac development arrest 25) (1003 aa)
     
 
  0.998
Bra035095
AT1G79150 (E=0.0) | binding (835 aa)
     
 
  0.998
Bra003620
AT1G79150 (E=5e-030) | binding (163 aa)
     
 
  0.998
Bra004892
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (1259 aa)
     
 
  0.997
Bra000371
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (738 aa)
     
 
  0.997
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.997
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
 
  0.997
Bra015344
AT1G04730 (E=0.0) | AAA-type ATPase family protein (1622 aa)
     
 
  0.997
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.997
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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