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Bra007188 protein (Brassica rapa) - STRING interaction network
"Bra007188" - AT1G07070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007188AT1G07070 (E=3e-047) | 60S ribosomal protein L35a (RPL35aA) (90 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra031034
AT1G18540 (E=3e-107) | 60S ribosomal protein L6 (RPL6A) (234 aa)
     
  0.999
Bra025895
AT1G18540 (E=5e-109) | 60S ribosomal protein L6 (RPL6A) (234 aa)
     
  0.999
Bra016555
AT1G18540 (E=2e-103) | 60S ribosomal protein L6 (RPL6A) (234 aa)
     
  0.999
Bra015940
AT1G74060 (E=5e-107) | 60S ribosomal protein L6 (RPL6B) (233 aa)
     
  0.999
Bra008128
AT1G74050 (E=1e-103) | 60S ribosomal protein L6 (RPL6C) (233 aa)
     
  0.999
Bra027325
AT1G29970 (E=7e-104) RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome (293 aa)
     
  0.999
Bra022978
AT2G34480 (E=2e-087) | 60S ribosomal protein L18A (RPL18aB) (211 aa)
     
  0.999
Bra005421
AT2G34480 (E=1e-101) | 60S ribosomal protein L18A (RPL18aB) (178 aa)
     
  0.999
Bra010805
AT2G34480 (E=6e-093) | 60S ribosomal protein L18A (RPL18aB) (214 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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