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Bra007190 protein (Brassica rapa) - STRING interaction network
"Bra007190" - AT3G55780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007190AT3G55780 (E=9e-168) | glycosyl hydrolase family 17 protein (377 aa)    
Predicted Functional Partners:
Bra039163
AT3G02210 (E=1e-245) COBL1 | COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) (455 aa)
           
  0.408
Bra035382
AT5G35740 (E=6e-057) | glycosyl hydrolase family protein 17 (119 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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