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Bra007194 protein (Brassica rapa) - STRING interaction network
"Bra007194" - AT3G55830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007194AT3G55830 (E=5e-173) EPC1 | EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (330 aa)    
Predicted Functional Partners:
Bra040019
AT3G07620 (E=9e-216) | exostosin family protein (553 aa)
         
  0.603
Bra038960
AT4G13990 (E=3e-253) | exostosin family protein (512 aa)
         
  0.603
Bra038949
AT5G33290 (E=7e-221) XGD1 | XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic (449 aa)
         
  0.603
Bra038505
AT4G16745 (E=3e-265) | exostosin family protein (546 aa)
         
  0.603
Bra038288
AT3G45400 (E=7e-242) | exostosin family protein (469 aa)
         
  0.603
Bra036746
AT1G34270 (E=2e-218) | exostosin family protein (479 aa)
         
  0.603
Bra036680
AT2G20370 (E=2e-285) KAM1, MUR3 | MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups (599 aa)
         
  0.603
Bra036554
AT5G25820 (E=1e-246) | exostosin family protein (616 aa)
         
  0.603
Bra036467
AT2G20370 (E=1e-278) KAM1, MUR3 | MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups (585 aa)
         
  0.603
Bra035655
AT2G29040 (E=4e-247) | exostosin family protein (663 aa)
         
  0.603
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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