STRINGSTRING
Bra007204 protein (Brassica rapa) - STRING interaction network
"Bra007204" - AT3G55970 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007204AT3G55970 (E=3e-182) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (621 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
         
  0.920
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
         
  0.920
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
         
  0.920
Bra029711
AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (310 aa)
       
  0.899
Bra028876
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1967 aa)
         
  0.889
Bra009598
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1985 aa)
         
  0.889
Bra005717
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1849 aa)
         
  0.889
Bra041101
AT3G08690 (E=8e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (148 aa)
       
  0.800
Bra036549
AT5G25760 (E=2e-085) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (190 aa)
       
  0.800
Bra035606
AT5G56170 (E=2e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- LRE (LORELEI) (TAIR-AT4G26466.1); Has 71 Blast hits to 71 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (299 aa)
       
  0.800
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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