STRINGSTRING
Bra007213 protein (Brassica rapa) - STRING interaction network
"Bra007213" - AT3G56060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007213AT3G56060 (E=8e-246) | glucose-methanol-choline (GMC) oxidoreductase family protein (570 aa)    
Predicted Functional Partners:
Bra030906
AT1G54100 (E=4e-265) ALDH7B4 | ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (504 aa)
   
 
  0.948
Bra019528
AT3G48170 (E=2e-286) ALDH10A9 | ALDH10A9; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (503 aa)
   
 
  0.948
Bra003781
AT1G74920 (E=8e-282) ALDH10A8 | ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (501 aa)
   
 
  0.948
Bra040960
AT1G52570 (E=0.0) PLDALPHA2 | PLDALPHA2 (phosphlipase d alpha 2); phospholipase D ; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (812 aa)
         
  0.862
Bra030375
AT1G52570 (E=0.0) PLDALPHA2 | PLDALPHA2 (phosphlipase d alpha 2); phospholipase D ; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (812 aa)
         
  0.862
Bra027209
AT3G15730 (E=0.0) PLDALPHA1, PLD | PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D ; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (810 aa)
         
  0.862
Bra021132
AT3G15730 (E=0.0) PLDALPHA1, PLD | PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D ; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (812 aa)
         
  0.862
PSD2
AT4G25970 (E=0.0) PSD3 | PSD3 (phosphatidylserine decarboxylase 3); phosphatidylserine decarboxylase ; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine (636 aa)
         
  0.859
Bra022178
AT3G16785 (E=0.0) PLDP1, PLDZ1, PLDZETA1, PLD ZETA 1 | PLDP1 (PHOSPHOLIPASE D P1); phospholipase D (1072 aa)
         
  0.857
Bra038501
AT4G16700 (E=4e-184) PSD1 | PSD1 (phosphatidylserine decarboxylase 1); phosphatidylserine decarboxylase (445 aa)
         
  0.854
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]