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Bra007217 protein (Brassica rapa) - STRING interaction network
"Bra007217" - AT3G56120 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Bra007217AT3G56120 (E=4e-094) | Met-10+ like family protein ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (431 aa)    
Predicted Functional Partners:
Bra004895
AT2G45270 (E=1e-225) | glycoprotease M22 family protein (479 aa)
 
 
   
  0.668
Bra012027
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.663
Bra031378
AT1G22270 (E=2e-040) | unknown protein (127 aa)
     
 
  0.663
Bra012318
AT1G22270 (E=2e-049) | unknown protein (125 aa)
     
 
  0.663
Bra012027.1-P
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.663
Bra000803
AT4G04670 (E=0.0) | Met-10+ like family protein / kelch repeat-containing protein (987 aa)
   
   
  0.627
Bra038528
AT2G22400 (E=0.0) | NOL1/NOP2/sun family protein (810 aa)
     
   
  0.603
Bra030242
AT2G22400 (E=0.0) | NOL1/NOP2/sun family protein (793 aa)
     
   
  0.603
Bra008750
AT5G14600 (E=4e-159) | tRNA (adenine-N1-)-methyltransferase (320 aa)
     
   
  0.589
Bra021469
AT3G02320 (E=6e-295) | RNA binding / tRNA (guanine-N2-)-methyltransferase (573 aa)
     
   
  0.587
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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