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Bra007221 protein (Brassica rapa) - STRING interaction network
"Bra007221" - AT3G56160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007221AT3G56160 (E=2e-120) | bile acid-sodium symporter (424 aa)    
Predicted Functional Partners:
Bra038067
AT4G15770 (E=6e-098) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
       
      0.510
Bra033510
AT4G15770 (E=1e-097) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
       
      0.510
Bra012765
AT4G15770 (E=1e-099) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
       
      0.510
Bra037457
AT5G48840 (E=1e-135) PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization (317 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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