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Bra007225 protein (Brassica rapa) - STRING interaction network
"Bra007225" - AT3G56200 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007225AT3G56200 (E=9e-212) | amino acid transporter family protein (434 aa)    
Predicted Functional Partners:
Bra040786
AT4G38360 (E=5e-075) | unknown protein (357 aa)
     
 
  0.524
Bra034803
AT3G11900 (E=3e-219) ANT1 | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (427 aa)
     
 
  0.513
Bra001425
AT3G11900 (E=2e-227) ANT1 | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (426 aa)
     
 
  0.513
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
           
  0.485
Bra038036
AT5G01230 (E=7e-176) | FtsJ-like methyltransferase family protein ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (309 aa)
           
  0.483
Bra009635
AT5G01230 (E=8e-167) | FtsJ-like methyltransferase family protein ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (310 aa)
           
  0.483
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
       
 
  0.423
Bra019089
AT4G26720 (E=6e-177) PPX1, PPX-1 | PPX1 (PROTEIN PHOSPHATASE X 1); protein serine/threonine phosphatase (305 aa)
       
 
  0.410
Bra009697
AT5G23580 (E=5e-253) CDPK9, ATCDPK9, CPK12, ATCPK12 | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (920 aa)
     
   
  0.404
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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