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Bra007236 protein (Brassica rapa) - STRING interaction network
"Bra007236" - AT3G56320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007236AT3G56320 (E=2e-196) | nucleotidyltransferase family protein (586 aa)    
Predicted Functional Partners:
Bra035426
AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative (620 aa)
     
 
  0.806
Bra035425
AT1G59760 (E=1e-203) | ATP-dependent RNA helicase, putative (378 aa)
     
 
  0.806
Bra029783
AT2G06990 (E=0.0) HEN2 | HEN2 (hua enhancer 2); ATP-dependent helicase/ RNA helicase (984 aa)
     
 
  0.806
Bra027835
AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative (956 aa)
     
 
  0.806
Bra039932
AT3G43590 (E=1e-035) | zinc knuckle (CCHC-type) family protein (310 aa)
     
 
  0.770
Bra034972
AT3G43590 (E=2e-193) | zinc knuckle (CCHC-type) family protein (551 aa)
     
 
  0.770
Bra033593
AT1G75560 (E=1e-080) | zinc knuckle (CCHC-type) family protein (252 aa)
     
 
  0.770
Bra029118
AT5G52380 (E=1e-103) | zinc knuckle (CCHC-type) family protein (267 aa)
     
 
  0.770
Bra028306
AT5G52380 (E=1e-037) | zinc knuckle (CCHC-type) family protein (138 aa)
     
 
  0.770
Bra015833
AT1G75560 (E=2e-097) | zinc knuckle (CCHC-type) family protein (246 aa)
     
 
  0.770
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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