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Bra007239 protein (Brassica rapa) - STRING interaction network
"Bra007239" - AT3G56350 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007239AT3G56350 (E=6e-117) | superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (227 aa)    
Predicted Functional Partners:
Bra018596
AT1G08845 (E=4e-099) | structural constituent of ribosome ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (376 aa)
     
  0.886
Bra034394
AT2G28190 (E=7e-082) CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (207 aa)
     
  0.884
Bra031642
AT1G08830 (E=1e-081) CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (152 aa)
     
  0.884
Bra011971
AT2G28190 (E=3e-052) CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (203 aa)
     
  0.884
Bra002133
AT5G18100 (E=2e-081) CSD3 | CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (162 aa)
     
  0.884
Bra035166
AT1G80620 (E=1e-151) | ribosomal protein S15 family protein (417 aa)
   
 
  0.803
Bra026746
AT1G15810 (E=2e-076) | ribosomal protein S15 family protein (395 aa)
   
 
  0.803
Bra026100
AT1G15810 (E=6e-102) | ribosomal protein S15 family protein (421 aa)
   
 
  0.803
Bra008450
AT1G80620 (E=2e-131) | ribosomal protein S15 family protein (391 aa)
   
 
  0.803
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
   
 
  0.794
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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