STRINGSTRING
Bra007243 protein (Brassica rapa) - STRING interaction network
"Bra007243" - AT3G56400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007243AT3G56400 (E=6e-080) WRKY70, ATWRKY70 | WRKY70; transcription factor/ transcription repressor (276 aa)    
Predicted Functional Partners:
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
           
  0.541
Bra035148
AT1G80840 (E=5e-133) WRKY40, ATWRKY40 | WRKY40; transcription factor (300 aa)
     
   
  0.523
Bra008435
AT1G80840 (E=1e-102) WRKY40, ATWRKY40 | WRKY40; transcription factor (290 aa)
     
   
  0.523
Bra003588
AT1G80840 (E=6e-135) WRKY40, ATWRKY40 | WRKY40; transcription factor (297 aa)
     
   
  0.510
Bra008165
AT1G74710 (E=6e-286) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (564 aa)
           
  0.477
Bra003789
AT1G74710 (E=2e-264) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (567 aa)
           
  0.477
Bra012805
AT3G52430 (E=4e-189) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (630 aa)
     
   
  0.473
Bra006922
AT3G52430 (E=8e-195) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (547 aa)
     
   
  0.473
Bra000955
AT4G01370 (E=3e-213) ATMPK4, MPK4 | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (373 aa)
           
  0.473
Bra033775
AT3G48090 (E=3e-194) EDS1 | EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase (600 aa)
           
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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