STRINGSTRING
Bra007244 protein (Brassica rapa) - STRING interaction network
"Bra007244" - AT3G56410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007244AT3G56410 (E=5e-033) | unknown protein (719 aa)    
Predicted Functional Partners:
Bra013162
AT2G06210 (E=3e-294) ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); binding (1051 aa)
     
  0.972
Bra015951
AT1G73960 (E=0.0) TAF2 | TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding (1391 aa)
     
      0.904
Bra038327
AT1G69070 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPro-IPR007276); Has 64668 Blast hits to 30830 proteins in 1152 species- Archae - 207; Bacteria - 18692; Metazoa - 20758; Fungi - 6782; Plants - 2177; Viruses - 523; Other Eukaryotes - 15529 (source- NCBI BLink). (904 aa)
     
      0.901
Bra039543
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein (944 aa)
       
      0.899
Bra032998
AT1G33390 (E=0.0) | helicase domain-containing protein (1237 aa)
       
      0.899
Bra024202
AT4G28450 (E=7e-223) | nucleotide binding / protein binding (452 aa)
       
      0.899
Bra013452
AT4G20280 (E=1e-061) TAF11 | TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (203 aa)
       
      0.899
Bra010382
AT4G28200 (E=2e-270) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- RNA processing; LOCATED IN- intracellular; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA-processing protein, HAT helix (InterPro-IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 352 Blast hits to 342 proteins in 144 species- Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 130; Plants - 24; Viruses - 0; Other Eukaryotes - 87 (source- NCBI BLink). (646 aa)
       
      0.899
Bra005881
AT2G47990 (E=4e-225) SWA1, EDA13, EDA19 | SWA1 (SLOW WALKER1); nucleotide binding (533 aa)
       
      0.899
Bra031459
AT1G61040 (E=1e-243) VIP5 | VIP5 (vernalization independence 5); DNA binding (630 aa)
       
  0.882
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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