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Bra007245 protein (Brassica rapa) - STRING interaction network
"Bra007245" - AT3G56420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007245AT3G56420 (E=8e-060) | INVOLVED IN- cell redox homeostasis; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Thioredoxin, core (InterPro-IPR015467), Thioredoxin domain (InterPro-IPR013766), Thioredoxin, conserved site (InterPro-IPR017937), Thioredoxin-like subdomain (InterPro-IPR006662), Thioredoxin-like (InterPro-IPR017936), Thioredoxin-like fold (InterPro-IPR012336); BEST Arabidopsis thaliana protein match is- ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); protein disulfide isomerase (TAIR-AT2G40790.1); Has 68 [...] (140 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
  0.977
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
   
  0.971
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
     
 
  0.963
Bra009483
AT5G04140 (E=0.0) GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (1620 aa)
     
 
  0.963
Bra000220
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1586 aa)
     
 
  0.963
Bra038667
AT3G11630 (E=3e-043) | 2-cys peroxiredoxin, chloroplast (BAS1) (225 aa)
   
  0.951
Bra034824
AT3G11630 (E=7e-113) | 2-cys peroxiredoxin, chloroplast (BAS1) (261 aa)
   
  0.951
Bra009181
AT5G06290 (E=1e-118) 2-Cys Prx B | 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (269 aa)
   
  0.951
Bra001415
AT3G11630 (E=8e-106) | 2-cys peroxiredoxin, chloroplast (BAS1) (307 aa)
   
  0.951
Bra037274
AT2G17420 (E=7e-086) NTRA, ATNTRA, NTR2 | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A); thioredoxin-disulfide reductase (334 aa)
   
  0.950
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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