STRINGSTRING
Bra007250 protein (Brassica rapa) - STRING interaction network
"Bra007250" - AT3G56510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007250AT3G56510 (E=2e-118) | TBP-binding protein, putative (257 aa)    
Predicted Functional Partners:
Bra039140
AT3G01160 (E=6e-146) | unknown protein (710 aa)
     
 
  0.977
Bra001018
AT3G01160 (E=1e-017) | unknown protein (116 aa)
     
 
  0.977
Bra028656
AT5G08420 (E=6e-116) | RNA binding ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (386 aa)
     
      0.972
Bra005702
AT5G08420 (E=3e-056) | RNA binding (209 aa)
     
      0.972
Bra007291
AT3G56990 (E=0.0) EDA7 | EDA7 (embryo sac development arrest 7) (725 aa)
     
      0.971
Bra003262
AT3G56990 (E=1e-293) EDA7 | EDA7 (embryo sac development arrest 7) (708 aa)
     
      0.971
Bra018680
AT1G07840 (E=1e-131) | leucine zipper factor-related (310 aa)
     
 
  0.960
Bra035936
AT5G61330 (E=9e-153) | rRNA processing protein-related (410 aa)
     
      0.958
Bra012968
AT5G61330 (E=6e-159) | rRNA processing protein-related (323 aa)
     
      0.958
Bra023878
AT1G23280 (E=4e-015) | MAK16 protein-related (96 aa)
     
        0.917
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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