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Bra007252 protein (Brassica rapa) - STRING interaction network
"Bra007252" - AT3G56570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007252AT3G56570 (E=1e-188) | SET domain-containing protein (499 aa)    
Predicted Functional Partners:
Bra037647
AT3G60120 (E=1e-172) BGLU27 | BGLU27 (BETA GLUCOSIDASE 27); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (803 aa)
       
      0.613
Bra040197
AT3G04380 (E=2e-191) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (942 aa)
       
 
  0.518
Bra001104
AT3G04380 (E=5e-194) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (756 aa)
       
 
  0.518
Bra028018
AT3G55080 (E=3e-025) | SET domain-containing protein (143 aa)
       
 
  0.511
Bra007140
AT3G55080 (E=2e-141) | SET domain-containing protein (446 aa)
       
 
  0.511
Bra007135
AT3G55080 (E=2e-045) | SET domain-containing protein (327 aa)
       
 
  0.511
Bra039782
AT3G53430 (E=4e-081) | 60S ribosomal protein L12 (RPL12B) (166 aa)
       
 
  0.495
Bra039782.1-P
AT3G53430 (E=4e-081) | 60S ribosomal protein L12 (RPL12B) (166 aa)
       
 
  0.495
Bra017204
AT3G53430 (E=1e-080) | 60S ribosomal protein L12 (RPL12B) (166 aa)
       
 
  0.495
Bra017204.1-P
AT3G53430 (E=1e-080) | 60S ribosomal protein L12 (RPL12B) (166 aa)
       
 
  0.495
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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