STRINGSTRING
Bra007261 protein (Brassica rapa) - STRING interaction network
"Bra007261" - AT3G56680 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007261AT3G56680 (E=4e-021) | nucleic acid binding (88 aa)    
Predicted Functional Partners:
Bra037748
AT5G63610 (E=1e-234) HEN3, CDKE;1, ATCDK8 | CDKE;1 (CYCLIN-DEPENDENT KINASE E;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (468 aa)
       
      0.619
Bra039151
AT3G02090 (E=1e-258) MPPBETA | mitochondrial processing peptidase beta subunit, putative (529 aa)
       
      0.613
Bra021477
AT3G02090 (E=1e-266) MPPBETA | mitochondrial processing peptidase beta subunit, putative (527 aa)
       
      0.613
Bra034017
AT1G67180 (E=6e-194) | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (461 aa)
     
      0.563
Bra034188
AT4G03130 (E=2e-147) | transcription coactivator (785 aa)
     
      0.553
Bra031286
AT3G21480 (E=1e-163) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- intracellular; CONTAINS InterPro DOMAIN/s- BRCT (InterPro-IPR001357); BEST Arabidopsis thaliana protein match is- transcription coactivator (TAIR-AT4G03130.1); Has 489 Blast hits to 455 proteins in 115 species- Archae - 2; Bacteria - 37; Metazoa - 270; Fungi - 30; Plants - 45; Viruses - 0; Other Eukaryotes - 105 (source- NCBI BLink). (982 aa)
     
      0.553
Bra007292
AT3G57000 (E=6e-100) | nucleolar essential protein-related (295 aa)
       
      0.519
Bra040401
AT3G04740 (E=0.0) SWP, MED14, ATMED14 | SWP (STRUWWELPETER) (1634 aa)
       
      0.501
Bra006242
AT5G14170 (E=8e-202) CHC1 | CHC1 (503 aa)
       
      0.470
Bra030405
AT1G51980 (E=7e-238) | mitochondrial processing peptidase alpha subunit, putative (504 aa)
       
      0.469
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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