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Bra007265 protein (Brassica rapa) - STRING interaction network
"Bra007265" - AT3G56710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007265AT3G56710 (E=2e-042) SIB1 | SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding / protein binding (149 aa)    
Predicted Functional Partners:
Bra008513
AT1G64860 (E=4e-182) SIGA, SIG1, SIG2, SIGB, RPOD1 | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (492 aa)
       
 
  0.881
Bra000064
AT2G38470 (E=4e-154) WRKY33, ATWRKY33 | WRKY33; transcription factor (473 aa)
     
 
  0.602
Bra009735
AT5G24120 (E=3e-179) SIGE, SIG5, ATSIG5 | SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (510 aa)
       
 
  0.572
Bra026466
AT5G24120 (E=1e-192) SIGE, SIG5, ATSIG5 | SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (486 aa)
       
 
  0.552
Bra017117
AT2G38470 (E=1e-091) WRKY33, ATWRKY33 | WRKY33; transcription factor (463 aa)
     
 
  0.496
Bra005104
AT2G38470 (E=3e-093) WRKY33, ATWRKY33 | WRKY33; transcription factor (457 aa)
     
 
  0.496
Bra022786
AT2G30250 (E=3e-172) WRKY25, ATWRKY25 | WRKY25; transcription factor (378 aa)
       
 
  0.449
Bra018325
AT2G30250 (E=8e-153) WRKY25, ATWRKY25 | WRKY25; transcription factor (373 aa)
       
 
  0.449
Bra037569
AT3G18690 (E=3e-081) MKS1 | MKS1 (MAP kinase substrate 1); protein binding (217 aa)
           
  0.416
Bra037588
AT3G18360 (E=5e-041) | VQ motif-containing protein (287 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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