STRINGSTRING
Bra007281 protein (Brassica rapa) - STRING interaction network
"Bra007281" - AT3G56900 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007281AT3G56900 (E=2e-228) | aladin-related / adracalin-related (442 aa)    
Predicted Functional Partners:
Bra015851
AT1G75340 (E=1e-081) | zinc finger (CCCH-type) family protein (398 aa)
       
      0.905
Bra029733
AT3G08943 (E=0.0) | binding / protein transporter (872 aa)
       
    0.810
Bra003054
AT5G53480 (E=0.0) | importin beta-2, putative (868 aa)
       
    0.810
Bra014602
AT3G57870 (E=6e-092) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.754
Bra014406
AT3G57870 (E=6e-081) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.754
Bra007363
AT3G57870 (E=1e-077) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.754
Bra003301
AT3G57870 (E=7e-078) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.754
Bra027371
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1072 aa)
     
    0.752
Bra021532
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1069 aa)
     
    0.752
Bra013073
AT3G14120 (E=6e-167) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (473 aa)
     
    0.752
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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