STRINGSTRING
Bra007284 protein (Brassica rapa) - STRING interaction network
"Bra007284" - AT3G56940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007284AT3G56940 (E=4e-212) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (837 aa)    
Predicted Functional Partners:
Bra019192
AT4G25080 (E=8e-069) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (135 aa)
 
 
  0.981
Bra002177
AT5G18660 (E=1e-192) PCB2 | PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2); 3,8-divinyl protochlorophyllide a 8-vinyl reductase (410 aa)
   
 
  0.947
Bra015908
AT1G74470 (E=1e-235) | geranylgeranyl reductase (466 aa)
 
 
  0.926
Bra008152
AT1G74470 (E=1e-245) | geranylgeranyl reductase (466 aa)
 
 
  0.926
Bra033415
AT1G03630 (E=4e-190) POR C, PORC | POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase (400 aa)
     
 
  0.911
Bra030540
AT1G03630 (E=2e-188) POR C, PORC | POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase (398 aa)
     
 
  0.911
Bra026349
AT4G27440 (E=5e-187) PORB | PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase (388 aa)
     
 
  0.911
Bra019049
AT4G27440 (E=7e-166) PORB | PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase (398 aa)
     
 
  0.911
Bra003004
AT5G54190 (E=4e-201) PORA | PORA; oxidoreductase/ protochlorophyllide reductase (403 aa)
     
 
  0.911
Bra006208
AT5G13630 (E=0.0) GUN5, CCH, CHLH, CCH1 | GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase (1382 aa)
 
   
  0.866
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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