STRINGSTRING
Bra007292 protein (Brassica rapa) - STRING interaction network
"Bra007292" - AT3G57000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007292AT3G57000 (E=6e-100) | nucleolar essential protein-related (295 aa)    
Predicted Functional Partners:
Bra023536
AT5G15750 (E=5e-084) | RNA-binding S4 domain-containing protein (182 aa)
     
  0.996
Bra006320
AT5G15750 (E=3e-093) | RNA-binding S4 domain-containing protein (182 aa)
     
  0.996
Bra005881
AT2G47990 (E=4e-225) SWA1, EDA13, EDA19 | SWA1 (SLOW WALKER1); nucleotide binding (533 aa)
     
    0.993
Bra030096
AT1G31660 (E=2e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (244 aa)
     
  0.993
Bra014995
AT1G31660 (E=2e-030) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (148 aa)
     
  0.993
Bra014911
AT1G31660 (E=5e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (707 aa)
     
  0.993
Bra019148
AT4G25630 (E=3e-129) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (307 aa)
     
  0.991
Bra013905
AT4G25630 (E=4e-127) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (310 aa)
     
  0.991
Bra036111
AT5G27120 (E=2e-232) | SAR DNA-binding protein, putative (536 aa)
     
  0.991
Bra020601
AT5G27120 (E=3e-109) | SAR DNA-binding protein, putative (488 aa)
     
  0.991
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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