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Bra007297 protein (Brassica rapa) - STRING interaction network
"Bra007297" - AT3G57060 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007297AT3G57060 (E=0.0) | binding ; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1345 aa)    
Predicted Functional Partners:
Bra025364
AT5G48600 (E=0.0) ATSMC3, ATCAP-C, ATSMC4 | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter (1246 aa)
     
  0.999
Bra028134
AT5G37630 (E=0.0) EMB2656 | EMB2656 (EMBRYO DEFECTIVE 2656); binding (1028 aa)
     
  0.997
Bra021800
AT2G32590 (E=2e-149) | INVOLVED IN- mitosis, mitotic cell cycle; LOCATED IN- nucleus, chloroplast; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Barren (InterPro-IPR008418); Has 340 Blast hits to 330 proteins in 142 species- Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 102; Plants - 21; Viruses - 1; Other Eukaryotes - 81 (source- NCBI BLink). (566 aa)
     
  0.996
Bra005604
AT2G32590 (E=0.0) | INVOLVED IN- mitosis, mitotic cell cycle; LOCATED IN- nucleus, chloroplast; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Barren (InterPro-IPR008418); Has 340 Blast hits to 330 proteins in 142 species- Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 102; Plants - 21; Viruses - 1; Other Eukaryotes - 81 (source- NCBI BLink). (669 aa)
     
  0.996
Bra018145
AT3G47460 (E=0.0) ATSMC2 | ATSMC2; transporter (1175 aa)
     
  0.995
Bra010079
AT5G62410 (E=0.0) SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (1175 aa)
     
  0.995
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
   
  0.987
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
   
  0.987
Bra013254
AT3G54670 (E=5e-291) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1221 aa)
     
  0.970
Bra007088
AT3G54670 (E=0.0) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1237 aa)
     
  0.970
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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