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Bra007308 protein (Brassica rapa) - STRING interaction network
"Bra007308" - AT3G57170 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007308AT3G57170 (E=1e-217) | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (685 aa)    
Predicted Functional Partners:
Bra009589
AT3G45100 (E=2e-218) SETH2 | SETH2; transferase, transferring glycosyl groups (429 aa)
     
  0.952
Bra005376
AT2G34980 (E=4e-112) SETH1 | SETH1; phosphatidylinositol N-acetylglucosaminyltransferase/ transferase (312 aa)
     
  0.947
Bra003321
AT3G58130 (E=3e-125) | N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (256 aa)
     
 
  0.946
Bra017719
AT4G35530 (E=3e-085) | phosphatidylinositolglycan-related (194 aa)
     
  0.942
Bra011621
AT4G35530 (E=1e-084) | phosphatidylinositolglycan-related (194 aa)
     
  0.942
Bra005040
AT2G39445 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- PIG-P (InterPro-IPR013717), Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (InterPro-IPR016542); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G61280.1); Has 228 Blast hits to 228 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 60; Plants - 24; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink). (172 aa)
       
  0.938
Bra015919
AT1G74340 (E=1e-033) | dolichol phosphate-mannose biosynthesis regulatory protein-related (80 aa)
         
  0.931
Bra008145
AT1G74340 (E=3e-033) | dolichol phosphate-mannose biosynthesis regulatory protein-related (80 aa)
         
  0.931
Bra010739
AT4G38570 (E=1e-113) PIS2 | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2); phosphotransferase, for other substituted phosphate groups (243 aa)
     
 
    0.899
Bra004274
AT1G68000 (E=3e-108) ATPIS1, ATPIS | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase (229 aa)
     
 
    0.899
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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