STRINGSTRING
Bra007309 protein (Brassica rapa) - STRING interaction network
"Bra007309" - AT3G57180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007309AT3G57180 (E=4e-253) | GTP binding (659 aa)    
Predicted Functional Partners:
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
      0.981
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
      0.981
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.974
Bra039343
AT1G50920 (E=4e-019) | GTP-binding protein-related (241 aa)
     
 
  0.939
Bra038017
AT1G50920 (E=1e-030) | GTP-binding protein-related (172 aa)
     
 
  0.939
Bra035154
AT1G80770 (E=7e-224) PDE318 | PDE318 (pigment defective 318); GTP binding (455 aa)
     
 
  0.939
Bra034775
AT1G50920 (E=1e-059) | GTP-binding protein-related (447 aa)
     
 
  0.939
Bra030585
AT1G50920 (E=0.0) | GTP-binding protein-related ; Involved in the biogenesis of the 60S ribosomal subunit (667 aa)
     
 
  0.939
Bra019949
AT1G10300 (E=6e-037) | GTP-binding protein-related (94 aa)
     
 
  0.939
Bra019948
AT1G50920 (E=3e-096) | GTP-binding protein-related (261 aa)
     
 
  0.939
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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