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Bra007310 protein (Brassica rapa) - STRING interaction network
"Bra007310" - AT3G57190 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007310AT3G57190 (E=2e-172) | peptide chain release factor, putative (410 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
   
 
  0.959
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
   
 
  0.959
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
   
 
  0.959
Bra031557
AT1G07210 (E=5e-071) | 30S ribosomal protein S18 family (237 aa)
   
  0.945
Bra015562
AT1G07210 (E=8e-078) | 30S ribosomal protein S18 family (279 aa)
   
  0.945
Bra017876
AT4G39880 (E=4e-072) | ribosomal protein L23 family protein (176 aa)
     
    0.942
Bra011825
AT4G39880 (E=3e-073) | ribosomal protein L23 family protein (179 aa)
     
    0.942
Bra040702
AT3G01790 (E=4e-082) | ribosomal protein L13 family protein (193 aa)
   
  0.939
Bra036669
AT3G24830 (E=2e-111) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
  0.939
Bra036161
AT5G48760 (E=5e-112) | 60S ribosomal protein L13A (RPL13aD) (206 aa)
   
  0.939
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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