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Bra007313 protein (Brassica rapa) - STRING interaction network
"Bra007313" - AT3G57260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007313AT3G57260 (E=1e-119) BGL2, PR2, BG2, PR-2 | BGL2 (BETA-1,3-GLUCANASE 2); cellulase/ glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (316 aa)    
Predicted Functional Partners:
Bra004771
AT2G43570 (E=2e-110) | chitinase, putative (282 aa)
     
   
  0.642
Bra034754
AT3G12500 (E=1e-172) ATHCHIB, PR3, PR-3, CHI-B, B-CHI | ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase (323 aa)
           
  0.604
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
           
  0.574
Bra001123
AT3G04720 (E=2e-097) PR4, HEL, PR-4 | PR4 (PATHOGENESIS-RELATED 4); chitin binding (214 aa)
           
  0.542
Bra018917
AT1G51590 (E=2e-293) | mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (561 aa)
           
  0.540
Bra014291
AT1G51590 (E=4e-297) | mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (658 aa)
           
  0.540
Bra012805
AT3G52430 (E=4e-189) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (630 aa)
     
   
  0.536
Bra006922
AT3G52430 (E=8e-195) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (547 aa)
     
   
  0.536
Bra008165
AT1G74710 (E=6e-286) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (564 aa)
           
  0.505
Bra003789
AT1G74710 (E=2e-264) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (567 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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