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Bra007318 protein (Brassica rapa) - STRING interaction network
"Bra007318" - AT3G57300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007318AT3G57300 (E=0.0) INO80, ATINO80 | INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding (1496 aa)    
Predicted Functional Partners:
Bra035982
AT5G43500 (E=2e-198) ATARP9 | ATARP9 (ACTIN-RELATED PROTEIN 9); DNA binding / protein binding (565 aa)
       
  0.976
Bra020185
AT5G22330 (E=2e-239) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
     
  0.975
Bra006621
AT5G22330 (E=2e-240) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
     
  0.975
Bra002406
AT5G22330 (E=2e-253) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
     
  0.975
Bra035499
AT1G32750 (E=0.0) HAF01, HAF1, HAC13, GTD1, TAF1 | HAF01; DNA binding / histone acetyltransferase (1893 aa)
     
 
  0.966
Bra034758
AT3G12380 (E=1e-073) ATARP5 | ATARP5 (ACTIN-RELATED PROTEIN 5); structural constituent of cytoskeleton (412 aa)
       
  0.966
Bra037834
AT5G67630 (E=8e-034) | DNA helicase, putative (93 aa)
     
  0.965
Bra024433
AT5G67630 (E=8e-236) | DNA helicase, putative (466 aa)
     
  0.965
Bra015213
AT4G38495 (E=2e-041) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- YL1 nuclear, C-terminal (InterPro-IPR013272); Has 189 Blast hits to 189 proteins in 98 species- Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 83; Plants - 17; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink). (113 aa)
       
  0.958
Bra021391
AT2G47210 (E=5e-146) | myb family transcription factor (406 aa)
     
 
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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